gene expression data from microarray experiments Search Results


gene expression microarray experiments  (DNA Chip Research Inc)
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DNA Chip Research Inc gene expression microarray experiments
Gene Expression Microarray Experiments, supplied by DNA Chip Research Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gene expression microarray data gse14001  (Biotechnology Information)
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Biotechnology Information gene expression microarray data gse14001
Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
Gene Expression Microarray Data Gse14001, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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genome-wide microarray gene expression data  (GenomeDx Inc)
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GenomeDx Inc genome-wide microarray gene expression data
Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
Genome Wide Microarray Gene Expression Data, supplied by GenomeDx Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gene expression lab  (Rosetta Inpharmatics)
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Rosetta Inpharmatics gene expression lab
Heat map of the 103 DEGs identified in the integrated <t>microarray</t> analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.
Gene Expression Lab, supplied by Rosetta Inpharmatics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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glut4 microarray gene expression data  (Biotechnology Information)
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Biotechnology Information glut4 microarray gene expression data
<t> GLUT4 </t> data module statistics
Glut4 Microarray Gene Expression Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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high-throughput molecular abundance data, predominantly gene expression data generated by dna microarray  (Biotechnology Information)
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Biotechnology Information high-throughput molecular abundance data, predominantly gene expression data generated by dna microarray
<t> GLUT4 </t> data module statistics
High Throughput Molecular Abundance Data, Predominantly Gene Expression Data Generated By Dna Microarray, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray gene expression data illumina hg12v4  (Illumina Inc)
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Illumina Inc microarray gene expression data illumina hg12v4
<t> GLUT4 </t> data module statistics
Microarray Gene Expression Data Illumina Hg12v4, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gene expression microarray data  (GraphPad Software Inc)
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GraphPad Software Inc gene expression microarray data
<t> GLUT4 </t> data module statistics
Gene Expression Microarray Data, supplied by GraphPad Software Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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gene expression microarray data  (Joint Research Center)
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Joint Research Center gene expression microarray data
<t> GLUT4 </t> data module statistics
Gene Expression Microarray Data, supplied by Joint Research Center, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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microarray data medicago truncatula gene expression atlas  (Medicago)
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Medicago microarray data medicago truncatula gene expression atlas
Criteria used for gene expression filtering of M. <t> truncatula </t> genes identified in Task4
Microarray Data Medicago Truncatula Gene Expression Atlas, supplied by Medicago, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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vegf-a mrna expression microarray data  (Gene Logic Inc)
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Gene Logic Inc vegf-a mrna expression microarray data
Criteria used for gene expression filtering of M. <t> truncatula </t> genes identified in Task4
Vegf A Mrna Expression Microarray Data, supplied by Gene Logic Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna-seq and gene expression microarray data  (Biotechnology Information)
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Biotechnology Information rna-seq and gene expression microarray data
Criteria used for gene expression filtering of M. <t> truncatula </t> genes identified in Task4
Rna Seq And Gene Expression Microarray Data, supplied by Biotechnology Information, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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Image Search Results


Heat map of the 103 DEGs identified in the integrated microarray analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.

Journal: OncoTargets and therapy

Article Title: Integrated Analysis To Identify Molecular Biomarkers Of High-Grade Serous Ovarian Cancer

doi: 10.2147/OTT.S228678

Figure Lengend Snippet: Heat map of the 103 DEGs identified in the integrated microarray analysis. Each column represents one dataset, and each row represents one gene. The number in each rectangle is the log 2 FC value. The color gradient from blue to red represents the progression from down- to upregulation. Abbreviations: DEGs, differentially expressed genes; FC, fold change.

Article Snippet: Gene expression microarray data (GSE14001, GSE18520, GSE26712, GSE27651, GSE40595, and GSE54388) were downloaded from the National Center for Biotechnology Information Gene Expression Omnibus (GEO) database ( http://www.ncbi.nlm.nih.gov/geo/ ).

Techniques: Microarray

GLUT4 data module statistics

Journal: BMC Bioinformatics

Article Title: AMEND: active module identification using experimental data and network diffusion

doi: 10.1186/s12859-023-05376-z

Figure Lengend Snippet: GLUT4 data module statistics

Article Snippet: The GLUT4 microarray gene expression data was obtained from the National Center for Biotechnology Information-Gene Expression Omnibus (NCBI-GEO) database (AC NO: GSE35378) and derives from an adipose tissue GLUT4 KO-OX experiment in mice by Herman et al. [ – ].

Techniques:

Module-level empirical-to-hypergeometric ratio (mEHR) for selected modules, where each point is a pathway returned from ORA. Pathways below the red line are EV pathways. A AMEND GLUT4, B DOMINO GLUT4 module 2, C NetCore GLUT4 module 1, D AMEND Antidepressant, E DOMINO Antidepressant module 1, F NetCore Antidepressant module 1

Journal: BMC Bioinformatics

Article Title: AMEND: active module identification using experimental data and network diffusion

doi: 10.1186/s12859-023-05376-z

Figure Lengend Snippet: Module-level empirical-to-hypergeometric ratio (mEHR) for selected modules, where each point is a pathway returned from ORA. Pathways below the red line are EV pathways. A AMEND GLUT4, B DOMINO GLUT4 module 2, C NetCore GLUT4 module 1, D AMEND Antidepressant, E DOMINO Antidepressant module 1, F NetCore Antidepressant module 1

Article Snippet: The GLUT4 microarray gene expression data was obtained from the National Center for Biotechnology Information-Gene Expression Omnibus (NCBI-GEO) database (AC NO: GSE35378) and derives from an adipose tissue GLUT4 KO-OX experiment in mice by Herman et al. [ – ].

Techniques:

AMEND module for GLUT4 data. Darker shade of red signifies more extreme ECI

Journal: BMC Bioinformatics

Article Title: AMEND: active module identification using experimental data and network diffusion

doi: 10.1186/s12859-023-05376-z

Figure Lengend Snippet: AMEND module for GLUT4 data. Darker shade of red signifies more extreme ECI

Article Snippet: The GLUT4 microarray gene expression data was obtained from the National Center for Biotechnology Information-Gene Expression Omnibus (NCBI-GEO) database (AC NO: GSE35378) and derives from an adipose tissue GLUT4 KO-OX experiment in mice by Herman et al. [ – ].

Techniques:

Criteria used for gene expression filtering of M. truncatula genes identified in Task4

Journal: BMC Plant Biology

Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

doi: 10.1186/s12870-014-0333-0

Figure Lengend Snippet: Criteria used for gene expression filtering of M. truncatula genes identified in Task4

Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

Techniques: Gene Expression, Control

Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.

Journal: BMC Plant Biology

Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

doi: 10.1186/s12870-014-0333-0

Figure Lengend Snippet: Venn diagram of M. truncatula genes up-regulated under various AM-related conditions. Genes listed in Additional file : Table S2 (Task4) were subjected to combinatorial analysis according to the criteria listed in Table . Red domain, genes induced in mycorrhizal roots; green domain, genes induced by Myc-LCO after 6 h; dark blue domain, genes induced in laser-microdissected cortex cells with arbuscules; light blue domain, genes induced in the dmi3 mutant (compare with Table ). Criterion 5 (MF-24 h) did not yield any result. Genes identified according to Criterion 6 are marked in red. List A, B, and C are separately shown in Additional file : Table S3.

Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

Techniques: Mutagenesis

Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.

Journal: BMC Plant Biology

Article Title: A novel bioinformatics pipeline to discover genes related to arbuscular mycorrhizal symbiosis based on their evolutionary conservation pattern among higher plants

doi: 10.1186/s12870-014-0333-0

Figure Lengend Snippet: Phylogenetic analysis of an α-glucosidase with high conservation ratio. The first hit in the list of predicted AM-related proteins was an α-glucosidase (AES81209, Additional file : Table S4). The S. lycopersicum sequence was used to retrieve the closest homologues in a wide range of species (Additional file : File S1) for phylogenetic analysis. (a) Tree as in Figure with the first hit per species identified at NCBI by blastp against non-redundant protein database using the tomato α-glucosidase (Solyc03g094020.2.1) as a query. (b) Tree with all homologues of Solyc03g094020.2.1 from tomato ( S. lycopersicum ), grape vine ( V. vinifera ), poplar ( P. trichocarpa ), M. truncatula , and A. thaliana . Note the AM-related branch (Gluc_1) that has no homologue from A. thaliana . The closest Arabidopsis homologue (At_Gluc_1) clusters far away.

Article Snippet: Microarray data are available in the Medicago truncatula Gene Expression Atlas (MtGEA version 3; http://mtgea.noble.org/v3 ).

Techniques: Sequencing